Component
Phosphatidylserine
Independent biological entity. Read linked claims for experimental scope and context.
18 recorded relationships. Experimental role, claim status and evidence remain attached to each record.
How nutrients influence it
Every nutrient with a recorded effect on this component, credited to the nutrient that acted rather than the chapter that recorded it. Open a nutrient to see the findings and the conditions they were measured under.
Other things that act on it
Enzymes, hormones, genes, and other components with a recorded effect. These are not nutrients, so they do not count toward the arrows above. Each finding names the chapter that recorded it.
How nutrients reach it in more than one step
Chains of two or more recorded steps that end here, grouped by the nutrient they start from. Each step is a separate finding, so a chain is a route a mechanism could take, not proof that it does.
Tracing routes…
What it does
Every recorded relationship this component is part of, grouped by its role. Plain wording comes first; the technical statement follows.
What it acts on
PTDSS1 variants from Lenz-Majewski syndrome markedly reduced product inhibition by phosphatidylserine and increased phosphatidylserine synthesis in patient fibroblasts.
Experimental context and source evidence
- availability_state
- machinery_impairment Imported condition classification; unverified.
- evidence_access
- Primary abstract
- experimental_model
- Human genetics and patient fibroblast synthesis assays.
- limitations
- These gain-of-function variants are not serine shortage or proof of an effect from phosphatidylserine supplements.
- nutrient_topic
- L-Serine collection; species, compartment, exposure, co-substrates and manipulation remain explicit. · L-Serine
- plain_language
- Failure of a feedback brake can increase lipid production.
- primary_references
- Gain-of-function mutations in the phosphatidylserine synthase 1 (PTDSS1) gene cause Lenz-Majewski syndrome. · 2014 · https://pubmed.ncbi.nlm.nih.gov/24241535/ · DOI 10.1038/ng.2829
- trigger_kind
- machinery_impairment Imported condition classification; unverified.
L-Serine: synthesis, one-carbon metabolism, lipids and cross-nutrient mechanisms (2026-09-19) · lines 262–268
AI-assisted research curation; primary references, access levels and experimental limitations individually identified. Not publisher full text. · supports · Human genetics and patient fibroblast synthesis assays. · source_derived_draft · unverified_draft
## l-serine-pss1-feedback Failure of a feedback brake can increase lipid production. PTDSS1 variants from Lenz-Majewski syndrome markedly reduced product inhibition by phosphatidylserine and increased phosphatidylserine synthesis in patient fibroblasts. Model: Human genetics and patient fibroblast synthesis assays. Limitations: These gain-of-function variants are not serine shortage or proof of an effect from phosphatidylserine supplements. Evidence access: Primary abstract Gain-of-function mutations in the phosphatidylserine synthase 1 (PTDSS1) gene cause Lenz-Majewski syndrome. · 2014 · https://pubmed.ncbi.nlm.nih.gov/24241535/ · DOI 10.1038/ng.2829
Complete structured claim and evidence
What acts on it
The tested bovine-f2 Gla-domain protein showed calcium-specific contact with negatively charged phospholipid monolayers.
Experimental context and source evidence
- evidence_span
- {"source_cache": "artifacts/k2-research/9609692.abstract.txt", "locator": "Exact primary indexed abstract; zero-based, end-exclusive Unicode character offsets", "file_sha256": "d29ed548c28e5a8015742351c50aa94c8853d0f1846794964b67a73324c879bd", "start_char": 0, "end_char": 2064, "text_sha256": "d29ed548c28e5a8015742351c50aa94c8853d0f1846794964b67a73324c879bd"}
- experimental_model
- Protein adsorption to model phospholipid monolayers
- exposure
- Phosphatidylserine-containing monolayers
- limitations
- Model membrane binding, not whole-blood thrombosis. Species remain distinct.
- nutrient_topic
- Vitamin K2 research collection; topical membership is not evidence of a direct dietary effect. · Vitamin K2 / menaquinone family
- organism
- Purified human and bovine proteins
- plain_language
- Carboxylation supports a protein surface that interacts with calcium and membranes.
- primary_references
- [k2-p9609692] Adsorption of vitamin K-dependent blood coagulation proteins to spread phospholipid monolayers as determined from combined measurements of the surface pressure and surface protein concentration. (1998). https://pubmed.ncbi.nlm.nih.gov/9609692/ DOI: 10.1021/bi973118+
- tissue_or_cell_type
- Calcium-dependent Gla-domain membrane contact
Vitamin K2: menaquinone forms, carboxylation, recycling and nutrient interactions (2026-09-17) · lines 942–953
AI-assisted literature curation; primary study URLs and scope retained in the document and extraction. Not publisher full text. · supports · Protein adsorption to model phospholipid monolayers · source_derived_draft · unverified_draft
### k2-membrane-bovine-f2 The tested bovine-f2 Gla-domain protein showed calcium-specific contact with negatively charged phospholipid monolayers. Condition category: normal nutrient_topic: Vitamin K2 research collection; topical membership is not evidence of a direct dietary effect. plain_language: Carboxylation supports a protein surface that interacts with calcium and membranes. organism: Purified human and bovine proteins tissue_or_cell_type: Calcium-dependent Gla-domain membrane contact experimental_model: Protein adsorption to model phospholipid monolayers limitations: Model membrane binding, not whole-blood thrombosis. Species remain distinct. exposure: Phosphatidylserine-containing monolayers evidence_span: {"source_cache": "artifacts/k2-research/9609692.abstract.txt", "locator": "Exact primary indexed abstract; zero-based, end-exclusive Unicode character offsets", "file_sha256": "d29ed548c28e5a8015742351c50aa94c8853d0f1846794964b67a73324c879bd", "start_char": 0, "end_char": 2064, "text_sha256": "d29ed548c28e5a8015742351c50aa94c8853d0f1846794964b67a73324c879bd"} [k2-p9609692] Adsorption of vitamin K-dependent blood coagulation proteins to spread phospholipid monolayers as determined from combined measurements of the surface pressure and surface protein concentration. (1998). https://pubmed.ncbi.nlm.nih.gov/9609692/ DOI: 10.1021/bi973118+
Complete structured claim and evidenceThe tested bovine-proc Gla-domain protein showed calcium-specific contact with negatively charged phospholipid monolayers.
Experimental context and source evidence
- evidence_span
- {"source_cache": "artifacts/k2-research/9609692.abstract.txt", "locator": "Exact primary indexed abstract; zero-based, end-exclusive Unicode character offsets", "file_sha256": "d29ed548c28e5a8015742351c50aa94c8853d0f1846794964b67a73324c879bd", "start_char": 0, "end_char": 2064, "text_sha256": "d29ed548c28e5a8015742351c50aa94c8853d0f1846794964b67a73324c879bd"}
- experimental_model
- Protein adsorption to model phospholipid monolayers
- exposure
- Phosphatidylserine-containing monolayers
- limitations
- Model membrane binding, not whole-blood thrombosis. Species remain distinct.
- nutrient_topic
- Vitamin K2 research collection; topical membership is not evidence of a direct dietary effect. · Vitamin K2 / menaquinone family
- organism
- Purified human and bovine proteins
- plain_language
- Carboxylation supports a protein surface that interacts with calcium and membranes.
- primary_references
- [k2-p9609692] Adsorption of vitamin K-dependent blood coagulation proteins to spread phospholipid monolayers as determined from combined measurements of the surface pressure and surface protein concentration. (1998). https://pubmed.ncbi.nlm.nih.gov/9609692/ DOI: 10.1021/bi973118+
- tissue_or_cell_type
- Calcium-dependent Gla-domain membrane contact
Vitamin K2: menaquinone forms, carboxylation, recycling and nutrient interactions (2026-09-17) · lines 981–992
AI-assisted literature curation; primary study URLs and scope retained in the document and extraction. Not publisher full text. · supports · Protein adsorption to model phospholipid monolayers · source_derived_draft · unverified_draft
### k2-membrane-bovine-proc The tested bovine-proc Gla-domain protein showed calcium-specific contact with negatively charged phospholipid monolayers. Condition category: normal nutrient_topic: Vitamin K2 research collection; topical membership is not evidence of a direct dietary effect. plain_language: Carboxylation supports a protein surface that interacts with calcium and membranes. organism: Purified human and bovine proteins tissue_or_cell_type: Calcium-dependent Gla-domain membrane contact experimental_model: Protein adsorption to model phospholipid monolayers limitations: Model membrane binding, not whole-blood thrombosis. Species remain distinct. exposure: Phosphatidylserine-containing monolayers evidence_span: {"source_cache": "artifacts/k2-research/9609692.abstract.txt", "locator": "Exact primary indexed abstract; zero-based, end-exclusive Unicode character offsets", "file_sha256": "d29ed548c28e5a8015742351c50aa94c8853d0f1846794964b67a73324c879bd", "start_char": 0, "end_char": 2064, "text_sha256": "d29ed548c28e5a8015742351c50aa94c8853d0f1846794964b67a73324c879bd"} [k2-p9609692] Adsorption of vitamin K-dependent blood coagulation proteins to spread phospholipid monolayers as determined from combined measurements of the surface pressure and surface protein concentration. (1998). https://pubmed.ncbi.nlm.nih.gov/9609692/ DOI: 10.1021/bi973118+
Complete structured claim and evidenceThe tested f9 Gla-domain protein showed calcium-specific contact with negatively charged phospholipid monolayers.
Experimental context and source evidence
- evidence_span
- {"source_cache": "artifacts/k2-research/9609692.abstract.txt", "locator": "Exact primary indexed abstract; zero-based, end-exclusive Unicode character offsets", "file_sha256": "d29ed548c28e5a8015742351c50aa94c8853d0f1846794964b67a73324c879bd", "start_char": 0, "end_char": 2064, "text_sha256": "d29ed548c28e5a8015742351c50aa94c8853d0f1846794964b67a73324c879bd"}
- experimental_model
- Protein adsorption to model phospholipid monolayers
- exposure
- Phosphatidylserine-containing monolayers
- limitations
- Model membrane binding, not whole-blood thrombosis. Species remain distinct.
- nutrient_topic
- Vitamin K2 research collection; topical membership is not evidence of a direct dietary effect. · Vitamin K2 / menaquinone family
- organism
- Purified human and bovine proteins
- plain_language
- Carboxylation supports a protein surface that interacts with calcium and membranes.
- primary_references
- [k2-p9609692] Adsorption of vitamin K-dependent blood coagulation proteins to spread phospholipid monolayers as determined from combined measurements of the surface pressure and surface protein concentration. (1998). https://pubmed.ncbi.nlm.nih.gov/9609692/ DOI: 10.1021/bi973118+
- tissue_or_cell_type
- Calcium-dependent Gla-domain membrane contact
Vitamin K2: menaquinone forms, carboxylation, recycling and nutrient interactions (2026-09-17) · lines 955–966
AI-assisted literature curation; primary study URLs and scope retained in the document and extraction. Not publisher full text. · supports · Protein adsorption to model phospholipid monolayers · source_derived_draft · unverified_draft
### k2-membrane-f9 The tested f9 Gla-domain protein showed calcium-specific contact with negatively charged phospholipid monolayers. Condition category: normal nutrient_topic: Vitamin K2 research collection; topical membership is not evidence of a direct dietary effect. plain_language: Carboxylation supports a protein surface that interacts with calcium and membranes. organism: Purified human and bovine proteins tissue_or_cell_type: Calcium-dependent Gla-domain membrane contact experimental_model: Protein adsorption to model phospholipid monolayers limitations: Model membrane binding, not whole-blood thrombosis. Species remain distinct. exposure: Phosphatidylserine-containing monolayers evidence_span: {"source_cache": "artifacts/k2-research/9609692.abstract.txt", "locator": "Exact primary indexed abstract; zero-based, end-exclusive Unicode character offsets", "file_sha256": "d29ed548c28e5a8015742351c50aa94c8853d0f1846794964b67a73324c879bd", "start_char": 0, "end_char": 2064, "text_sha256": "d29ed548c28e5a8015742351c50aa94c8853d0f1846794964b67a73324c879bd"} [k2-p9609692] Adsorption of vitamin K-dependent blood coagulation proteins to spread phospholipid monolayers as determined from combined measurements of the surface pressure and surface protein concentration. (1998). https://pubmed.ncbi.nlm.nih.gov/9609692/ DOI: 10.1021/bi973118+
Complete structured claim and evidenceThe tested proc Gla-domain protein showed calcium-specific contact with negatively charged phospholipid monolayers.
Experimental context and source evidence
- evidence_span
- {"source_cache": "artifacts/k2-research/9609692.abstract.txt", "locator": "Exact primary indexed abstract; zero-based, end-exclusive Unicode character offsets", "file_sha256": "d29ed548c28e5a8015742351c50aa94c8853d0f1846794964b67a73324c879bd", "start_char": 0, "end_char": 2064, "text_sha256": "d29ed548c28e5a8015742351c50aa94c8853d0f1846794964b67a73324c879bd"}
- experimental_model
- Protein adsorption to model phospholipid monolayers
- exposure
- Phosphatidylserine-containing monolayers
- limitations
- Model membrane binding, not whole-blood thrombosis. Species remain distinct.
- nutrient_topic
- Vitamin K2 research collection; topical membership is not evidence of a direct dietary effect. · Vitamin K2 / menaquinone family
- organism
- Purified human and bovine proteins
- plain_language
- Carboxylation supports a protein surface that interacts with calcium and membranes.
- primary_references
- [k2-p9609692] Adsorption of vitamin K-dependent blood coagulation proteins to spread phospholipid monolayers as determined from combined measurements of the surface pressure and surface protein concentration. (1998). https://pubmed.ncbi.nlm.nih.gov/9609692/ DOI: 10.1021/bi973118+
- tissue_or_cell_type
- Calcium-dependent Gla-domain membrane contact
Vitamin K2: menaquinone forms, carboxylation, recycling and nutrient interactions (2026-09-17) · lines 994–1005
AI-assisted literature curation; primary study URLs and scope retained in the document and extraction. Not publisher full text. · supports · Protein adsorption to model phospholipid monolayers · source_derived_draft · unverified_draft
### k2-membrane-proc The tested proc Gla-domain protein showed calcium-specific contact with negatively charged phospholipid monolayers. Condition category: normal nutrient_topic: Vitamin K2 research collection; topical membership is not evidence of a direct dietary effect. plain_language: Carboxylation supports a protein surface that interacts with calcium and membranes. organism: Purified human and bovine proteins tissue_or_cell_type: Calcium-dependent Gla-domain membrane contact experimental_model: Protein adsorption to model phospholipid monolayers limitations: Model membrane binding, not whole-blood thrombosis. Species remain distinct. exposure: Phosphatidylserine-containing monolayers evidence_span: {"source_cache": "artifacts/k2-research/9609692.abstract.txt", "locator": "Exact primary indexed abstract; zero-based, end-exclusive Unicode character offsets", "file_sha256": "d29ed548c28e5a8015742351c50aa94c8853d0f1846794964b67a73324c879bd", "start_char": 0, "end_char": 2064, "text_sha256": "d29ed548c28e5a8015742351c50aa94c8853d0f1846794964b67a73324c879bd"} [k2-p9609692] Adsorption of vitamin K-dependent blood coagulation proteins to spread phospholipid monolayers as determined from combined measurements of the surface pressure and surface protein concentration. (1998). https://pubmed.ncbi.nlm.nih.gov/9609692/ DOI: 10.1021/bi973118+
Complete structured claim and evidenceThe tested pros1 Gla-domain protein showed calcium-specific contact with negatively charged phospholipid monolayers.
Experimental context and source evidence
- evidence_span
- {"source_cache": "artifacts/k2-research/9609692.abstract.txt", "locator": "Exact primary indexed abstract; zero-based, end-exclusive Unicode character offsets", "file_sha256": "d29ed548c28e5a8015742351c50aa94c8853d0f1846794964b67a73324c879bd", "start_char": 0, "end_char": 2064, "text_sha256": "d29ed548c28e5a8015742351c50aa94c8853d0f1846794964b67a73324c879bd"}
- experimental_model
- Protein adsorption to model phospholipid monolayers
- exposure
- Phosphatidylserine-containing monolayers
- limitations
- Model membrane binding, not whole-blood thrombosis. Species remain distinct.
- nutrient_topic
- Vitamin K2 research collection; topical membership is not evidence of a direct dietary effect. · Vitamin K2 / menaquinone family
- organism
- Purified human and bovine proteins
- plain_language
- Carboxylation supports a protein surface that interacts with calcium and membranes.
- primary_references
- [k2-p9609692] Adsorption of vitamin K-dependent blood coagulation proteins to spread phospholipid monolayers as determined from combined measurements of the surface pressure and surface protein concentration. (1998). https://pubmed.ncbi.nlm.nih.gov/9609692/ DOI: 10.1021/bi973118+
- tissue_or_cell_type
- Calcium-dependent Gla-domain membrane contact
Vitamin K2: menaquinone forms, carboxylation, recycling and nutrient interactions (2026-09-17) · lines 968–979
AI-assisted literature curation; primary study URLs and scope retained in the document and extraction. Not publisher full text. · supports · Protein adsorption to model phospholipid monolayers · source_derived_draft · unverified_draft
### k2-membrane-pros1 The tested pros1 Gla-domain protein showed calcium-specific contact with negatively charged phospholipid monolayers. Condition category: normal nutrient_topic: Vitamin K2 research collection; topical membership is not evidence of a direct dietary effect. plain_language: Carboxylation supports a protein surface that interacts with calcium and membranes. organism: Purified human and bovine proteins tissue_or_cell_type: Calcium-dependent Gla-domain membrane contact experimental_model: Protein adsorption to model phospholipid monolayers limitations: Model membrane binding, not whole-blood thrombosis. Species remain distinct. exposure: Phosphatidylserine-containing monolayers evidence_span: {"source_cache": "artifacts/k2-research/9609692.abstract.txt", "locator": "Exact primary indexed abstract; zero-based, end-exclusive Unicode character offsets", "file_sha256": "d29ed548c28e5a8015742351c50aa94c8853d0f1846794964b67a73324c879bd", "start_char": 0, "end_char": 2064, "text_sha256": "d29ed548c28e5a8015742351c50aa94c8853d0f1846794964b67a73324c879bd"} [k2-p9609692] Adsorption of vitamin K-dependent blood coagulation proteins to spread phospholipid monolayers as determined from combined measurements of the surface pressure and surface protein concentration. (1998). https://pubmed.ncbi.nlm.nih.gov/9609692/ DOI: 10.1021/bi973118+
Complete structured claim and evidencePurified human PSS1 reconstituted with phosphatidylcholine showed serine base-exchange activity producing phosphatidylserine.
Experimental context and source evidence
- evidence_access
- Primary full text
- experimental_model
- Human PSS1 proteoliposomes with POPC and radioactive serine assays.
- limitations
- The bound endogenous lipid density could not conclusively distinguish PC from PE; no universal exclusion of PE is asserted.
- nutrient_topic
- L-Serine collection; species, compartment, exposure, co-substrates and manipulation remain explicit. · L-Serine
- plain_language
- Serine can replace a phospholipid headgroup to make a different membrane lipid.
- primary_references
- Structural basis for catalytic mechanism of human phosphatidylserine synthase 1. · 2025 · https://pubmed.ncbi.nlm.nih.gov/40044636/ · DOI 10.1038/s41421-025-00775-3
L-Serine: synthesis, one-carbon metabolism, lipids and cross-nutrient mechanisms (2026-09-19) · lines 246–252
AI-assisted research curation; primary references, access levels and experimental limitations individually identified. Not publisher full text. · supports · Human PSS1 proteoliposomes with POPC and radioactive serine assays. · source_derived_draft · unverified_draft
## l-serine-pss1-exchange Serine can replace a phospholipid headgroup to make a different membrane lipid. Purified human PSS1 reconstituted with phosphatidylcholine showed serine base-exchange activity producing phosphatidylserine. Model: Human PSS1 proteoliposomes with POPC and radioactive serine assays. Limitations: The bound endogenous lipid density could not conclusively distinguish PC from PE; no universal exclusion of PE is asserted. Evidence access: Primary full text Structural basis for catalytic mechanism of human phosphatidylserine synthase 1. · 2025 · https://pubmed.ncbi.nlm.nih.gov/40044636/ · DOI 10.1038/s41421-025-00775-3
Complete structured claim and evidencePurified human PSS2 converted phosphatidylethanolamine, but not phosphatidylcholine, into phosphatidylserine; added phosphatidylserine inhibited purified PSS2.
Experimental context and source evidence
- evidence_access
- Primary abstract
- experimental_model
- Purified epitope-tagged human PSS1/PSS2 substrate and feedback assays.
- limitations
- In this preparation PSS1 used both PC and PE and was not inhibited by added PS; purified-enzyme feedback cannot be assumed identical across preparations or intact cells.
- nutrient_topic
- L-Serine collection; species, compartment, exposure, co-substrates and manipulation remain explicit. · L-Serine
- plain_language
- A second enzyme uses a different membrane-lipid starting material.
- primary_references
- Purification and characterization of human phosphatidylserine synthases 1 and 2. · 2009 · https://pubmed.ncbi.nlm.nih.gov/19014349/ · DOI 10.1042/BJ20081597
L-Serine: synthesis, one-carbon metabolism, lipids and cross-nutrient mechanisms (2026-09-19) · lines 414–420
AI-assisted research curation; primary references, access levels and experimental limitations individually identified. Not publisher full text. · supports · Purified epitope-tagged human PSS1/PSS2 substrate and feedback assays. · source_derived_draft · unverified_draft
## l-serine-pss2-exchange A second enzyme uses a different membrane-lipid starting material. Purified human PSS2 converted phosphatidylethanolamine, but not phosphatidylcholine, into phosphatidylserine; added phosphatidylserine inhibited purified PSS2. Model: Purified epitope-tagged human PSS1/PSS2 substrate and feedback assays. Limitations: In this preparation PSS1 used both PC and PE and was not inhibited by added PS; purified-enzyme feedback cannot be assumed identical across preparations or intact cells. Evidence access: Primary abstract Purification and characterization of human phosphatidylserine synthases 1 and 2. · 2009 · https://pubmed.ncbi.nlm.nih.gov/19014349/ · DOI 10.1042/BJ20081597
Complete structured claim and evidence
Where it participates (unsigned role)
In the bovine prothrombin Gla-domain structure, the lysophosphatidylserine headgroup contacted domain-bound Ca2+ and gamma-carboxyglutamate residues.
Experimental context and source evidence
- compartment_description
- Extracellular protein-membrane interface
- experimental_model
- X-ray crystallography and NMR with lysophosphatidylserine
- limitations
- The carboxylated Gla domain is a vitamin-K-dependent protein state; calcium binding does not perform gamma-carboxylation.
- nutrient_topic
- Calcium research collection; topical membership is not evidence of a direct dietary effect. · Calcium
- organism
- Bos taurus
- plain_language
- Protein-bound calcium helps a clotting protein recognize a membrane lipid headgroup.
- primary_references
- [huang2003] Structural basis of membrane binding by Gla domains of vitamin K-dependent proteins (2003). https://www.nature.com/articles/nsb971 DOI: 10.1038/nsb971
- tissue_or_cell_type
- Purified prothrombin fragment; blood-protein context
Calcium: mechanism-first literature curation (2026-09-17) · lines 1104–1114
AI-assisted literature curation; primary study URLs and scope retained in the document and extraction. Not publisher full text. · supports · X-ray crystallography and NMR with lysophosphatidylserine · source_derived_draft · unverified_draft
### calcium-gla-phosphatidylserine-binding In the bovine prothrombin Gla-domain structure, the lysophosphatidylserine headgroup contacted domain-bound Ca2+ and gamma-carboxyglutamate residues. Condition category: normal nutrient_topic: Calcium research collection; topical membership is not evidence of a direct dietary effect. plain_language: Protein-bound calcium helps a clotting protein recognize a membrane lipid headgroup. organism: Bos taurus tissue_or_cell_type: Purified prothrombin fragment; blood-protein context experimental_model: X-ray crystallography and NMR with lysophosphatidylserine limitations: The carboxylated Gla domain is a vitamin-K-dependent protein state; calcium binding does not perform gamma-carboxylation. compartment_description: Extracellular protein-membrane interface [huang2003] Structural basis of membrane binding by Gla domains of vitamin K-dependent proteins (2003). https://www.nature.com/articles/nsb971 DOI: 10.1038/nsb971
Complete structured claim and evidenceFactor Xa activated bovine prothrombin efficiently when factor Va, Ca2+ and phosphatidylserine-containing phospholipids assembled the complete prothrombinase system.
Experimental context and source evidence
- compartment_description
- Phospholipid surface
- experimental_model
- Kinetic reconstitution with defined phospholipids
- limitations
- Low residual Xa activity exists without the complete complex; this establishes biochemical assistance, not that extra dietary calcium accelerates clotting.
- nutrient_topic
- Calcium research collection; topical membership is not evidence of a direct dietary effect. · Calcium
- organism
- Bos taurus
- plain_language
- Calcium helps the membrane-associated clotting machinery generate thrombin.
- primary_references
- [rosing1980] The role of phospholipids and factor Va in the prothrombinase complex (1980). https://pubmed.ncbi.nlm.nih.gov/7350159/ DOI: 10.1016/S0021-9258(19)86294-4
- tissue_or_cell_type
- Purified blood proteins
Calcium: mechanism-first literature curation (2026-09-17) · lines 1116–1126
AI-assisted literature curation; primary study URLs and scope retained in the document and extraction. Not publisher full text. · supports · Kinetic reconstitution with defined phospholipids · source_derived_draft · unverified_draft
### calcium-phospholipid-prothrombinase Factor Xa activated bovine prothrombin efficiently when factor Va, Ca2+ and phosphatidylserine-containing phospholipids assembled the complete prothrombinase system. Condition category: normal nutrient_topic: Calcium research collection; topical membership is not evidence of a direct dietary effect. plain_language: Calcium helps the membrane-associated clotting machinery generate thrombin. organism: Bos taurus tissue_or_cell_type: Purified blood proteins experimental_model: Kinetic reconstitution with defined phospholipids limitations: Low residual Xa activity exists without the complete complex; this establishes biochemical assistance, not that extra dietary calcium accelerates clotting. compartment_description: Phospholipid surface [rosing1980] The role of phospholipids and factor Va in the prothrombinase complex (1980). https://pubmed.ncbi.nlm.nih.gov/7350159/ DOI: 10.1016/S0021-9258(19)86294-4
Complete structured claim and evidenceFunctional AXL activation by GAS6 in the reporter system depended on vitamin K-mediated carboxylation and phosphatidylserine engagement.
Experimental context and source evidence
- evidence_span
- {"source_cache": "artifacts/k2-research/29176978.abstract.txt", "locator": "Exact primary indexed abstract; zero-based, end-exclusive Unicode character offsets", "file_sha256": "14dfae68318cd2654ee423539418eb489da66e26117e35473e99986b29b8efd7", "start_char": 0, "end_char": 1704, "text_sha256": "14dfae68318cd2654ee423539418eb489da66e26117e35473e99986b29b8efd7"}
- experimental_model
- TAM reporter cells and GAS6 domain/point mutagenesis
- exposure
- Warfarin, Gla/EGF mutations and PS-positive cells or vesicles
- limitations
- Receptor binding and receptor activation are different endpoints; no clinical K2 immune benefit was tested.
- nutrient_topic
- Vitamin K2 research collection; topical membership is not evidence of a direct dietary effect. · Vitamin K2 / menaquinone family
- organism
- Recombinant human GAS6 and TAM reporter systems
- plain_language
- A modified signaling protein needs the right membrane surface to activate its receptor.
- primary_references
- [k2-p29176978] Requirement of Gamma-Carboxyglutamic Acid Modification and Phosphatidylserine Binding for the Activation of Tyro3, Axl, and Mertk Receptors by Growth Arrest-Specific 6. (2017). https://pubmed.ncbi.nlm.nih.gov/29176978/ DOI: 10.3389/fimmu.2017.01521
- tissue_or_cell_type
- Phosphatidylserine-bearing surfaces and receptors
Vitamin K2: menaquinone forms, carboxylation, recycling and nutrient interactions (2026-09-17) · lines 591–602
AI-assisted literature curation; primary study URLs and scope retained in the document and extraction. Not publisher full text. · supports · TAM reporter cells and GAS6 domain/point mutagenesis · source_derived_draft · unverified_draft
### k2-gas6-axl Functional AXL activation by GAS6 in the reporter system depended on vitamin K-mediated carboxylation and phosphatidylserine engagement. Condition category: normal nutrient_topic: Vitamin K2 research collection; topical membership is not evidence of a direct dietary effect. plain_language: A modified signaling protein needs the right membrane surface to activate its receptor. organism: Recombinant human GAS6 and TAM reporter systems tissue_or_cell_type: Phosphatidylserine-bearing surfaces and receptors experimental_model: TAM reporter cells and GAS6 domain/point mutagenesis limitations: Receptor binding and receptor activation are different endpoints; no clinical K2 immune benefit was tested. exposure: Warfarin, Gla/EGF mutations and PS-positive cells or vesicles evidence_span: {"source_cache": "artifacts/k2-research/29176978.abstract.txt", "locator": "Exact primary indexed abstract; zero-based, end-exclusive Unicode character offsets", "file_sha256": "14dfae68318cd2654ee423539418eb489da66e26117e35473e99986b29b8efd7", "start_char": 0, "end_char": 1704, "text_sha256": "14dfae68318cd2654ee423539418eb489da66e26117e35473e99986b29b8efd7"} [k2-p29176978] Requirement of Gamma-Carboxyglutamic Acid Modification and Phosphatidylserine Binding for the Activation of Tyro3, Axl, and Mertk Receptors by Growth Arrest-Specific 6. (2017). https://pubmed.ncbi.nlm.nih.gov/29176978/ DOI: 10.3389/fimmu.2017.01521
Complete structured claim and evidenceFunctional MERTK activation by GAS6 in the reporter system depended on vitamin K-mediated carboxylation and phosphatidylserine engagement.
Experimental context and source evidence
- evidence_span
- {"source_cache": "artifacts/k2-research/29176978.abstract.txt", "locator": "Exact primary indexed abstract; zero-based, end-exclusive Unicode character offsets", "file_sha256": "14dfae68318cd2654ee423539418eb489da66e26117e35473e99986b29b8efd7", "start_char": 0, "end_char": 1704, "text_sha256": "14dfae68318cd2654ee423539418eb489da66e26117e35473e99986b29b8efd7"}
- experimental_model
- TAM reporter cells and GAS6 domain/point mutagenesis
- exposure
- Warfarin, Gla/EGF mutations and PS-positive cells or vesicles
- limitations
- Receptor binding and receptor activation are different endpoints; no clinical K2 immune benefit was tested.
- nutrient_topic
- Vitamin K2 research collection; topical membership is not evidence of a direct dietary effect. · Vitamin K2 / menaquinone family
- organism
- Recombinant human GAS6 and TAM reporter systems
- plain_language
- A modified signaling protein needs the right membrane surface to activate its receptor.
- primary_references
- [k2-p29176978] Requirement of Gamma-Carboxyglutamic Acid Modification and Phosphatidylserine Binding for the Activation of Tyro3, Axl, and Mertk Receptors by Growth Arrest-Specific 6. (2017). https://pubmed.ncbi.nlm.nih.gov/29176978/ DOI: 10.3389/fimmu.2017.01521
- tissue_or_cell_type
- Phosphatidylserine-bearing surfaces and receptors
Vitamin K2: menaquinone forms, carboxylation, recycling and nutrient interactions (2026-09-17) · lines 604–615
AI-assisted literature curation; primary study URLs and scope retained in the document and extraction. Not publisher full text. · supports · TAM reporter cells and GAS6 domain/point mutagenesis · source_derived_draft · unverified_draft
### k2-gas6-mertk Functional MERTK activation by GAS6 in the reporter system depended on vitamin K-mediated carboxylation and phosphatidylserine engagement. Condition category: normal nutrient_topic: Vitamin K2 research collection; topical membership is not evidence of a direct dietary effect. plain_language: A modified signaling protein needs the right membrane surface to activate its receptor. organism: Recombinant human GAS6 and TAM reporter systems tissue_or_cell_type: Phosphatidylserine-bearing surfaces and receptors experimental_model: TAM reporter cells and GAS6 domain/point mutagenesis limitations: Receptor binding and receptor activation are different endpoints; no clinical K2 immune benefit was tested. exposure: Warfarin, Gla/EGF mutations and PS-positive cells or vesicles evidence_span: {"source_cache": "artifacts/k2-research/29176978.abstract.txt", "locator": "Exact primary indexed abstract; zero-based, end-exclusive Unicode character offsets", "file_sha256": "14dfae68318cd2654ee423539418eb489da66e26117e35473e99986b29b8efd7", "start_char": 0, "end_char": 1704, "text_sha256": "14dfae68318cd2654ee423539418eb489da66e26117e35473e99986b29b8efd7"} [k2-p29176978] Requirement of Gamma-Carboxyglutamic Acid Modification and Phosphatidylserine Binding for the Activation of Tyro3, Axl, and Mertk Receptors by Growth Arrest-Specific 6. (2017). https://pubmed.ncbi.nlm.nih.gov/29176978/ DOI: 10.3389/fimmu.2017.01521
Complete structured claim and evidenceFunctional TYRO3 activation by GAS6 in the reporter system depended on vitamin K-mediated carboxylation and phosphatidylserine engagement.
Experimental context and source evidence
- evidence_span
- {"source_cache": "artifacts/k2-research/29176978.abstract.txt", "locator": "Exact primary indexed abstract; zero-based, end-exclusive Unicode character offsets", "file_sha256": "14dfae68318cd2654ee423539418eb489da66e26117e35473e99986b29b8efd7", "start_char": 0, "end_char": 1704, "text_sha256": "14dfae68318cd2654ee423539418eb489da66e26117e35473e99986b29b8efd7"}
- experimental_model
- TAM reporter cells and GAS6 domain/point mutagenesis
- exposure
- Warfarin, Gla/EGF mutations and PS-positive cells or vesicles
- limitations
- Receptor binding and receptor activation are different endpoints; no clinical K2 immune benefit was tested.
- nutrient_topic
- Vitamin K2 research collection; topical membership is not evidence of a direct dietary effect. · Vitamin K2 / menaquinone family
- organism
- Recombinant human GAS6 and TAM reporter systems
- plain_language
- A modified signaling protein needs the right membrane surface to activate its receptor.
- primary_references
- [k2-p29176978] Requirement of Gamma-Carboxyglutamic Acid Modification and Phosphatidylserine Binding for the Activation of Tyro3, Axl, and Mertk Receptors by Growth Arrest-Specific 6. (2017). https://pubmed.ncbi.nlm.nih.gov/29176978/ DOI: 10.3389/fimmu.2017.01521
- tissue_or_cell_type
- Phosphatidylserine-bearing surfaces and receptors
Vitamin K2: menaquinone forms, carboxylation, recycling and nutrient interactions (2026-09-17) · lines 578–589
AI-assisted literature curation; primary study URLs and scope retained in the document and extraction. Not publisher full text. · supports · TAM reporter cells and GAS6 domain/point mutagenesis · source_derived_draft · unverified_draft
### k2-gas6-tyro3 Functional TYRO3 activation by GAS6 in the reporter system depended on vitamin K-mediated carboxylation and phosphatidylserine engagement. Condition category: normal nutrient_topic: Vitamin K2 research collection; topical membership is not evidence of a direct dietary effect. plain_language: A modified signaling protein needs the right membrane surface to activate its receptor. organism: Recombinant human GAS6 and TAM reporter systems tissue_or_cell_type: Phosphatidylserine-bearing surfaces and receptors experimental_model: TAM reporter cells and GAS6 domain/point mutagenesis limitations: Receptor binding and receptor activation are different endpoints; no clinical K2 immune benefit was tested. exposure: Warfarin, Gla/EGF mutations and PS-positive cells or vesicles evidence_span: {"source_cache": "artifacts/k2-research/29176978.abstract.txt", "locator": "Exact primary indexed abstract; zero-based, end-exclusive Unicode character offsets", "file_sha256": "14dfae68318cd2654ee423539418eb489da66e26117e35473e99986b29b8efd7", "start_char": 0, "end_char": 1704, "text_sha256": "14dfae68318cd2654ee423539418eb489da66e26117e35473e99986b29b8efd7"} [k2-p29176978] Requirement of Gamma-Carboxyglutamic Acid Modification and Phosphatidylserine Binding for the Activation of Tyro3, Axl, and Mertk Receptors by Growth Arrest-Specific 6. (2017). https://pubmed.ncbi.nlm.nih.gov/29176978/ DOI: 10.3389/fimmu.2017.01521
Complete structured claim and evidenceHuman PISD converts phosphatidylserine to phosphatidylethanolamine in the inner mitochondrial membrane; patient fibroblasts with PISD variants showed reduced conversion.
Experimental context and source evidence
- evidence_access
- Primary abstract
- experimental_model
- Human family genetics and fibroblast lipid-conversion measurements.
- limitations
- This pathway uses membrane-bound phosphatidylserine, not free serine as the direct PISD substrate.
- nutrient_topic
- L-Serine collection; species, compartment, exposure, co-substrates and manipulation remain explicit. · L-Serine
- plain_language
- A serine-derived lipid feeds another lipid needed inside mitochondria.
- primary_references
- PISD is a mitochondrial disease gene causing skeletal dysplasia, cataracts, and white matter changes. · 2019 · https://pubmed.ncbi.nlm.nih.gov/30858161/ · DOI 10.26508/lsa.201900353
L-Serine: synthesis, one-carbon metabolism, lipids and cross-nutrient mechanisms (2026-09-19) · lines 422–428
AI-assisted research curation; primary references, access levels and experimental limitations individually identified. Not publisher full text. · supports · Human family genetics and fibroblast lipid-conversion measurements. · source_derived_draft · unverified_draft
## l-serine-pisd-decarboxylation A serine-derived lipid feeds another lipid needed inside mitochondria. Human PISD converts phosphatidylserine to phosphatidylethanolamine in the inner mitochondrial membrane; patient fibroblasts with PISD variants showed reduced conversion. Model: Human family genetics and fibroblast lipid-conversion measurements. Limitations: This pathway uses membrane-bound phosphatidylserine, not free serine as the direct PISD substrate. Evidence access: Primary abstract PISD is a mitochondrial disease gene causing skeletal dysplasia, cataracts, and white matter changes. · 2019 · https://pubmed.ncbi.nlm.nih.gov/30858161/ · DOI 10.26508/lsa.201900353
Complete structured claim and evidencePISD patient fibroblasts had fragmented mitochondria, enlarged lysosomes and reduced maximal oxygen consumption; one variant impaired the enzyme autocatalytic processing required for activity.
Experimental context and source evidence
- availability_state
- machinery_impairment Imported condition classification; unverified.
- evidence_access
- Primary abstract
- experimental_model
- Two affected sisters, patient fibroblasts and functional variant characterization.
- limitations
- The other allele produced an alternative splice product; different molecular defects remain distinct.
- nutrient_topic
- L-Serine collection; species, compartment, exposure, co-substrates and manipulation remain explicit. · L-Serine
- plain_language
- A downstream processing defect can persist despite precursor availability.
- primary_references
- PISD is a mitochondrial disease gene causing skeletal dysplasia, cataracts, and white matter changes. · 2019 · https://pubmed.ncbi.nlm.nih.gov/30858161/ · DOI 10.26508/lsa.201900353
- trigger_kind
- machinery_impairment Imported condition classification; unverified.
L-Serine: synthesis, one-carbon metabolism, lipids and cross-nutrient mechanisms (2026-09-19) · lines 430–436
AI-assisted research curation; primary references, access levels and experimental limitations individually identified. Not publisher full text. · supports · Two affected sisters, patient fibroblasts and functional variant characterization. · source_derived_draft · unverified_draft
## l-serine-pisd-failure A downstream processing defect can persist despite precursor availability. PISD patient fibroblasts had fragmented mitochondria, enlarged lysosomes and reduced maximal oxygen consumption; one variant impaired the enzyme autocatalytic processing required for activity. Model: Two affected sisters, patient fibroblasts and functional variant characterization. Limitations: The other allele produced an alternative splice product; different molecular defects remain distinct. Evidence access: Primary abstract PISD is a mitochondrial disease gene causing skeletal dysplasia, cataracts, and white matter changes. · 2019 · https://pubmed.ncbi.nlm.nih.gov/30858161/ · DOI 10.26508/lsa.201900353
Complete structured claim and evidenceRRR-alpha-tocopherol at 0.1–10 µM inhibited cofactor-dependent recombinant human PKC alpha activity in phosphatidylserine-containing assays.
Experimental context and source evidence
- cross_nutrient
- true
- experimental_model
- Recombinant HIS-tagged human PKC alpha biochemical assay
- exposure
- 15 ng PKC alpha; 2 mM CaCl2; phosphatidylserine 15–60 µg/mL; 5 min pretreatment, 30 min kinase assay.
- limitations
- Effect depends on reconstituted lipid composition and activation mode; it is not a clinical dosing claim.
- nutrient_topic
- Vitamin E research collection; topical membership is not evidence of a direct dietary effect. · Vitamin E
- organism
- Homo sapiens
- plain_language
- Natural alpha-tocopherol reduced PKC alpha activity in a purified system containing its lipid and calcium cofactors.
- primary_references
- [mccary2012] Vitamin E isoforms directly bind PKCα and differentially regulate activation of PKCα. (2012). https://pubmed.ncbi.nlm.nih.gov/21933153/ DOI: 10.1042/bj20111318
- tissue_or_cell_type
- Cell-free enzyme
Vitamin E: transport, membrane protection and nutrient interactions (2026-09-17) · lines 933–944
AI-assisted literature curation; primary study URLs and scope retained in the document and extraction. Not publisher full text. · supports · Recombinant HIS-tagged human PKC alpha biochemical assay · source_derived_draft · unverified_draft
### e-sig-alpha-pkc-cofactor RRR-alpha-tocopherol at 0.1–10 µM inhibited cofactor-dependent recombinant human PKC alpha activity in phosphatidylserine-containing assays. Condition category: normal nutrient_topic: Vitamin E research collection; topical membership is not evidence of a direct dietary effect. plain_language: Natural alpha-tocopherol reduced PKC alpha activity in a purified system containing its lipid and calcium cofactors. organism: Homo sapiens tissue_or_cell_type: Cell-free enzyme experimental_model: Recombinant HIS-tagged human PKC alpha biochemical assay limitations: Effect depends on reconstituted lipid composition and activation mode; it is not a clinical dosing claim. exposure: 15 ng PKC alpha; 2 mM CaCl2; phosphatidylserine 15–60 µg/mL; 5 min pretreatment, 30 min kinase assay. cross_nutrient: true [mccary2012] Vitamin E isoforms directly bind PKCα and differentially regulate activation of PKCα. (2012). https://pubmed.ncbi.nlm.nih.gov/21933153/ DOI: 10.1042/bj20111318
Complete structured claim and evidenceAdding 1 mol% alpha-tocopherol enhanced isolated PKC alpha C2-domain association with phosphatidylserine-containing lipid surfaces by surface plasmon resonance. Tocopherol without phosphatidylserine did not support binding.
Experimental context and source evidence
- cross_nutrient
- false
- experimental_model
- Surface plasmon resonance with recombinant C2 domain and lipid vesicles
- exposure
- Base lipid composition 70:20:10 mol%; alpha-tocopherol at 1 mol% replacing POPC; no-PS control had 10 mol% tocopherol.
- limitations
- A membrane association endpoint is distinct from kinase activation. No direct C2-domain binding to free tocopherol is claimed.
- nutrient_topic
- Vitamin E research collection; topical membership is not evidence of a direct dietary effect. · Vitamin E
- organism
- Recombinant construct; species not independently stated
- plain_language
- Alpha-tocopherol changed how the kinase’s membrane-binding domain associated with a membrane containing phosphatidylserine.
- primary_references
- [mccary2012] Vitamin E isoforms directly bind PKCα and differentially regulate activation of PKCα. (2012). https://pubmed.ncbi.nlm.nih.gov/21933153/ DOI: 10.1042/bj20111318
- tissue_or_cell_type
- Artificial POPC/POPE/POPS membrane
Vitamin E: transport, membrane protection and nutrient interactions (2026-09-17) · lines 998–1009
AI-assisted literature curation; primary study URLs and scope retained in the document and extraction. Not publisher full text. · supports · Surface plasmon resonance with recombinant C2 domain and lipid vesicles · source_derived_draft · unverified_draft
### e-sig-alpha-pkc-ps-association Adding 1 mol% alpha-tocopherol enhanced isolated PKC alpha C2-domain association with phosphatidylserine-containing lipid surfaces by surface plasmon resonance. Tocopherol without phosphatidylserine did not support binding. Condition category: normal nutrient_topic: Vitamin E research collection; topical membership is not evidence of a direct dietary effect. plain_language: Alpha-tocopherol changed how the kinase’s membrane-binding domain associated with a membrane containing phosphatidylserine. organism: Recombinant construct; species not independently stated tissue_or_cell_type: Artificial POPC/POPE/POPS membrane experimental_model: Surface plasmon resonance with recombinant C2 domain and lipid vesicles limitations: A membrane association endpoint is distinct from kinase activation. No direct C2-domain binding to free tocopherol is claimed. exposure: Base lipid composition 70:20:10 mol%; alpha-tocopherol at 1 mol% replacing POPC; no-PS control had 10 mol% tocopherol. cross_nutrient: false [mccary2012] Vitamin E isoforms directly bind PKCα and differentially regulate activation of PKCα. (2012). https://pubmed.ncbi.nlm.nih.gov/21933153/ DOI: 10.1042/bj20111318
Complete structured claim and evidenceRRR-gamma-tocopherol at 1 µM increased recombinant human PKC alpha activity with 15–30 µg/mL phosphatidylserine and calcium; it did not increase the low activity in the absence of phosphatidylserine.
Experimental context and source evidence
- cross_nutrient
- true
- experimental_model
- Recombinant HIS-tagged human PKC alpha biochemical assay
- exposure
- 1 µM gamma-tocopherol; 2 mM CaCl2; 15–30 µg/mL phosphatidylserine; 5 min pretreatment, 30 min kinase assay.
- limitations
- Small biochemical activation is not equivalent to uniformly increased inflammation in people; oxidative activation shows a different response.
- nutrient_topic
- Vitamin E research collection; topical membership is not evidence of a direct dietary effect. · Vitamin E
- organism
- Homo sapiens
- plain_language
- Natural gamma-tocopherol increased this kinase’s activity only when the required lipid cofactor was present.
- primary_references
- [mccary2012] Vitamin E isoforms directly bind PKCα and differentially regulate activation of PKCα. (2012). https://pubmed.ncbi.nlm.nih.gov/21933153/ DOI: 10.1042/bj20111318
- tissue_or_cell_type
- Cell-free enzyme
Vitamin E: transport, membrane protection and nutrient interactions (2026-09-17) · lines 946–957
AI-assisted literature curation; primary study URLs and scope retained in the document and extraction. Not publisher full text. · supports · Recombinant HIS-tagged human PKC alpha biochemical assay · source_derived_draft · unverified_draft
### e-sig-gamma-pkc-cofactor RRR-gamma-tocopherol at 1 µM increased recombinant human PKC alpha activity with 15–30 µg/mL phosphatidylserine and calcium; it did not increase the low activity in the absence of phosphatidylserine. Condition category: normal nutrient_topic: Vitamin E research collection; topical membership is not evidence of a direct dietary effect. plain_language: Natural gamma-tocopherol increased this kinase’s activity only when the required lipid cofactor was present. organism: Homo sapiens tissue_or_cell_type: Cell-free enzyme experimental_model: Recombinant HIS-tagged human PKC alpha biochemical assay limitations: Small biochemical activation is not equivalent to uniformly increased inflammation in people; oxidative activation shows a different response. exposure: 1 µM gamma-tocopherol; 2 mM CaCl2; 15–30 µg/mL phosphatidylserine; 5 min pretreatment, 30 min kinase assay. cross_nutrient: true [mccary2012] Vitamin E isoforms directly bind PKCα and differentially regulate activation of PKCα. (2012). https://pubmed.ncbi.nlm.nih.gov/21933153/ DOI: 10.1042/bj20111318
Complete structured claim and evidence
The events it takes part in
A mechanism often involves more than two components. These are the full events, with every participant and its role.
Situations it appears in
Low-supply and faulty-machinery situations recorded in the chapters where this component plays a part.
In the sources
Preserved passages that mention this component, quoted exactly. Open one to read it in context.
Open hypotheses
Proposed ideas that involve this component. They are labeled as hypotheses and do not change any recorded statement.
This is a research prototype built from draft material. It is not medical advice, and its statements still await verification against the original studies.