{"schema_version":"1.0","entities":[{"slug":"example-nutrient","entity_type_key":"nutrient_element","canonical_name":"Example Nutrient","display_name":"Example Nutrient","symbol":null,"description":"Fictional nutrient used only to demonstrate the template.","aliases":[]},{"slug":"example-alpha","entity_type_key":"protein","canonical_name":"Example Alpha","display_name":"Example Alpha","symbol":null,"description":"Fictional participant.","aliases":[]},{"slug":"example-beta","entity_type_key":"protein","canonical_name":"Example Beta","display_name":"Example Beta","symbol":null,"description":"Fictional participant.","aliases":[]}],"mechanisms":[{"key":"example-normal-event","event_type":"regulation","label":"Fictional normal activity","description":"","compartment":null,"participants":[{"entity":"example-alpha","role":"regulator","state_label":"","stoichiometry":null,"notes":""},{"entity":"example-beta","role":"target","state_label":"","stoichiometry":null,"notes":""}]},{"key":"example-low-event","event_type":"regulation","label":"Fictional insufficient-nutrient activity","description":"","compartment":null,"participants":[{"entity":"example-alpha","role":"regulator","state_label":"","stoichiometry":null,"notes":""},{"entity":"example-beta","role":"target","state_label":"","stoichiometry":null,"notes":""}]}],"claims":[{"key":"example-normal","subject":"example-alpha","predicate":"supports","object":"example-beta","mechanism_key":"example-normal-event","statement":"In a fictional cell model, Example Alpha supports Example Beta activity.","claim_class":"mechanistic","direction":"positive","condition":"normal","contexts":[{"dimension":"model","value":"Fictional cell model; this is not biological evidence.","entity":null,"comparator":null,"unit":null,"notes":""}],"experimental_contrast":null,"evidence":[{"revision_id":null,"start_line":2,"end_line":2,"quote":"In a fictional cell model, Example Alpha supports Example Beta activity.","relationship":"supports","directness":"reported_statement","model_system":"","notes":""}]},{"key":"example-low","subject":"example-alpha","predicate":"support_decreases","object":"example-beta","mechanism_key":"example-low-event","statement":"When Example Nutrient is insufficient in this fictional model, Example Alpha support of Example Beta decreases.","claim_class":"mechanistic","direction":"negative","condition":"nutrient_deficiency","contexts":[{"dimension":"availability_state","value":"Example Nutrient insufficient in a fictional model.","entity":null,"comparator":null,"unit":null,"notes":""}],"experimental_contrast":null,"evidence":[{"revision_id":null,"start_line":3,"end_line":3,"quote":"When Example Nutrient is insufficient in this fictional model, Example Alpha support of Example Beta decreases.","relationship":"supports","directness":"reported_statement","model_system":"","notes":""}]}],"scenarios":[{"key":"example-insufficient","nutrient":"example-nutrient","title":"Fictional nutrient insufficiency","system":"Fictional cell model","trigger_kind":"nutrient_deficiency","normal_role":"Example Alpha supports Example Beta in the fictional model.","trigger":"Insufficient Example Nutrient.","consequence":"Support decreases in the first fictional model.","scope":"Synthetic formatting example only.","limitations":"No real experiment, species, tissue, dose or duration is described.","reported_evidence":"Fictional statements for testing the input format.","step_keys":["example-low"],"entities":["example-alpha","example-beta"],"normal_claim_ids":[],"conflict_keys":["example-disagreement"]}],"conflicts":[{"key":"example-disagreement","title":"Synthetic disagreement between fictional models","kind":"context_difference","why":"The two fictional models report different outcomes. The source does not explain why; differences in experimental context would need investigation.","resolution":"Unresolved; needs review.","sides":[{"label":"First fictional model","revision_id":null,"start_line":3,"end_line":3,"quote":"When Example Nutrient is insufficient in this fictional model, Example Alpha support of Example Beta decreases.","claim_key":"example-low","existing_claim_id":null},{"label":"Second fictional model","revision_id":null,"start_line":4,"end_line":4,"quote":"A second fictional model reported no change under the same named condition.","claim_key":null,"existing_claim_id":null}]}],"unresolved":[{"text":"A second fictional model reported no change under the same named condition.","reason":"The reason for the model difference is not specified.","start_line":4,"end_line":4,"entity":null},{"text":"Whether either fictional model reflects any real system.","reason":"No species, tissue, dose or duration is given anywhere in the source, so the question belongs to no entity.","start_line":null,"end_line":null,"entity":null}],"claim_relations":[{"source_key":"example-low","existing_source_id":null,"target_key":"example-normal","existing_target_id":null,"relation_type":"limits_scope_of","notes":"The insufficient-nutrient result is recorded under one fictional condition and does not extend the normal reading to it. A relation states how a finding is read, not a new finding."}],"hypotheses":[{"key":"example-open-question","title":"Whether the fictional model difference is a context difference","summary":"The two fictional models disagree and the source gives no reason.","rationale":"A disagreement with no stated cause is a question, not a mechanism. Recording it as a hypothesis keeps it out of the claim set.","decisive_experiment":"Run both fictional models side by side under one stated condition and measure the same endpoint.","status":"hypothesis","roles":[{"entity":"example-alpha","claim_key":null,"existing_claim_id":null,"role":"subject"},{"entity":null,"claim_key":"example-low","existing_claim_id":null,"role":"supporting"},{"entity":null,"claim_key":"example-normal","existing_claim_id":null,"role":"opposing"}]}],"notes":"SYNTHETIC FORMAT EXAMPLE: these are not real scientific records. For an isolated test, use this exact original source:\n# Synthetic format demonstration\nIn a fictional cell model, Example Alpha supports Example Beta activity.\nWhen Example Nutrient is insufficient in this fictional model, Example Alpha support of Example Beta decreases.\nA second fictional model reported no change under the same named condition.\n"}